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Analysis Technique: T1 Particle-based models

These directly encode microscopic interactions between constituents and are therefore convenient to simulate, although scaling to biological length and timescales is challenging.

Related Research Projects

Credit: Lukas Hupe

Research Project: Bottom-up modelling of dense bacterial suspensions

Dense active suspensions, such as those formed by swarming bacteria, constitute a type of active matter that is particularly hard to model.

Credit: Jonas Isensee

Research Project: Collective tug-of-war dynamics: from molecular motors to ant groups

The emergence of directed transport as a collective behaviour of many microscopic constituents is a ubiquitous problem in the statistical physics of active particles.

Research Project: Control theory for topological active matter

Experimental techniques have demonstrated the ability to alter the collective dynamics of active systems with various types of external perturbations.

Credit: Jonas Isensee

Research Project: Defect dynamics in pulsating active matter

Some collective states in active matter exhibit topological properties through the formation of vortices and defects. In some living systems, defects have been shown to have important biological functions.

Credit: Jonas Willms

Research Project: Dense active matter and the cage escape dynamics of active particles

Passive particles form amorphous solids or glasses at high densities. The same is true of active particles that model living matter such as confluent tissues.

Credit: Ilias-Marios Sarris

Research Project: Dynamics of interacting molecular motors

The dynamics of the sperm flagellum has been recently studied with particular attention to its fluctuations. It has been found that the precision of the flagellar beating is close to that of an individual dynein motor powering its motion, which in turn is close to the bound dictated by the thermodynamic uncertainty relation.

Credit: Ilias-Marios Sarris

Research Project: Exploring (dry) active field theories (AMB+) to unravel solidification of protein condensates

The spatial organisation of proteins into dense condensates, widely attributed to nonequilibrium phase separation, offers a route to recruit or sequester proteins involved in functions at the cellular level.

Credit: Lukas Hupe

Research Project: Growth of cells in viscoelastic medium

Typically, the complex environments in which living systems reside are viscoelastic fluids. For example, the extracellular matrix comprises cross-linked, semiflexible polymeric filaments that respond sensitively to even small stresses generated by cells.

Credit: Jonas Isensee

Research Project: Learning non-reciprocal interactions between migrating cells

Owing to their active nature, interactions between migrating cells can be non-reciprocal. However, the extent to which cells control their collective behaviour through non-reciprocal interactions remains unclear.

Credit: Ilias-Marios Sarris

Research Project: Microscopically-informed active field theories

Active field theories are widely used to study collective effects in driven systems at all levels of organisation, allowing instabilities to pattern formation to be identified.

Credit: Patrick Zimmer

Research Project: Proliferating active media

While active matter theory has successfully advanced our understanding of the collective dynamics resulting from individual sources of activity, multiple active processes usually act in concert in real biological systems.

Credit: Ilias-Marios Sarris

Research Project: Statistical mechanics of motility and growth within extracellular matrices

Collective cellular activity and self-organisation phenomena arising from non-equilibrium activity are ubiquitous in tissues and cellular aggregates. However, the relationship between individual properties and biological patterns remains unexplored.